PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_162.25
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 248aa    MW: 27626.5 Da    PI: 4.8694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_162.25genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19107156355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr+++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+ +l+g
  evm.model.supercontig_162.25 107 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAAFALKG 156
                                   9*******.**********44465..***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-36106170IPR001471AP2/ERF domain
PfamPF008472.4E-13106156IPR001471AP2/ERF domain
PROSITE profilePS5103223.117106164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-30106165IPR001471AP2/ERF domain
CDDcd000183.60E-20107164No hitNo description
PRINTSPR003678.5E-11107118IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22107166IPR016177DNA-binding domain
PRINTSPR003678.5E-11130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDSSSSSSSS SSSSLSSSHH HYPFFSSDPY SSPSTYLLPF PNSNFNSQTL PFDENDSQEM  60
LLLGLLNQEP KPPHANSSSN NINEMNSIKQ EEEEEGVEEE GTREVSYRGV RRRPWGKYAA  120
EIRDSTRNGV RVWLGTFDTA EAAALAYDQA AFALKGSMAT LNFPMEKVYE SLREMKYGFE  180
EGCSPVLELK KIHSLRSRRG GGGGRSKKKK IAETYEKEME NHLVVLEDLG VDYLEELLRL  240
SEITTSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-27107165361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488287.11e-78PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC83e-62ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2SSD72e-78A0A0D2SSD7_G
STRINGPOPTR_0013s04240.12e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-45ethylene response factor 1